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CLOSTRIDIUM PASTEURIANUM RUBREDOXIN C42S MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5RXN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 PROTEIN WAS CRYSTALLISED FROM 50-60% SATURATED AMMONIUM SULFATE IN SODIUM ACETATE BUFFER (50 MM) AT PH 4., pH 4.0
Crystal Properties Matthews coefficient Solvent content 2.17 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.52 α = 90 b = 64.52 β = 90 c = 32.57 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE RIGAKU MIRRORS 1995-07-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 30 99.6 0.068 0.068 15 6.7 6061 19.03
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.65 1.71 96.9 0.141 4.9 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER OTHER THROUGHOUT 5RXN 1.65 50 6050 275 99.6 0.171 0.1554 0.201 0.186 RANDOM 24.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 16.8 p_transverse_tor 14.7 p_scangle_it 7.108 p_planar_tor 5.7 p_scbond_it 4.874 p_mcangle_it 3.284 p_mcbond_it 2.157 p_multtor_nbd 0.259 p_singtor_nbd 0.179 p_chiral_restr 0.117
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 16.8 p_transverse_tor 14.7 p_scangle_it 7.108 p_planar_tor 5.7 p_scbond_it 4.874 p_mcangle_it 3.284 p_mcbond_it 2.157 p_multtor_nbd 0.259 p_singtor_nbd 0.179 p_chiral_restr 0.117 p_xyhbond_nbd 0.086 p_planar_d 0.029 p_angle_d 0.024 p_bond_d 0.011 p_angle_deg p_hb_or_metal_coord p_plane_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 422 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling