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CLOSTRIDIUM PASTEURIANUM RUBREDOXIN G10VG43A MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5RXN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 PROTEIN WAS CRYSTALLISED FROM 70% SATURATED AMMONIUM SULFATE IN SODIUM ACETATE
BUFFER (50 MM) AT PH 5.0.
Crystal Properties Matthews coefficient Solvent content 3.1 60.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.85 α = 90 b = 61.85 β = 90 c = 80.45 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE RIGAKU RU200 MIRRORS 1996-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 94 0.092 10.9 2.8 12136
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.94 2.03 95.6 0.28 3.7 2.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 5RXN 1.9 30 12136 607 94 0.194 0.237 RANDOM 27
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 17.4 p_transverse_tor 14.9 p_scangle_it 7.325 p_scbond_it 5.143 p_planar_tor 4.7 p_mcangle_it 3.388 p_mcbond_it 2.348 p_multtor_nbd 0.271 p_singtor_nbd 0.17 p_angle_d 0.026
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 17.4 p_transverse_tor 14.9 p_scangle_it 7.325 p_scbond_it 5.143 p_planar_tor 4.7 p_mcangle_it 3.388 p_mcbond_it 2.348 p_multtor_nbd 0.271 p_singtor_nbd 0.17 p_angle_d 0.026 p_planar_d 0.026 p_bond_d 0.014 p_angle_deg p_hb_or_metal_coord p_plane_restr p_chiral_restr p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 850 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 2
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling