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STRUCTURE OF THE ADENYLATION DOMAIN OF AN NAD+ DEPENDENT LIGASE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 pH 4.6
Crystal Properties Matthews coefficient Solvent content 3.6 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.72 α = 90 b = 95.72 β = 90 c = 225.89 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 97.5 0.09 8.9 2.8 25982
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.9 99.2 0.308
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.8 20 25982 1301 97.4 0.23 0.23 0.2261 0.31 0.2991 RANDOM 47.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.4 p_staggered_tor 24.6 p_special_tor 15 p_planar_tor 4.3 p_scangle_it 4.057 p_mcangle_it 3.6 p_scbond_it 2.462 p_mcbond_it 2.122 p_multtor_nbd 0.282 p_singtor_nbd 0.221
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.4 p_staggered_tor 24.6 p_special_tor 15 p_planar_tor 4.3 p_scangle_it 4.057 p_mcangle_it 3.6 p_scbond_it 2.462 p_mcbond_it 2.122 p_multtor_nbd 0.282 p_singtor_nbd 0.221 p_xyhbond_nbd 0.218 p_chiral_restr 0.193 p_planar_d 0.061 p_angle_d 0.056 p_plane_restr 0.0266 p_bond_d 0.016 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4936 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling