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Crystal structure of spin labeled T4 Lysozyme (A82R1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C6T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 293 potassium phosphate, sodium phospahte, sodium choloride, sodium azide, oxidized beta-mercaptoehtanol , pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.66 53.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.293 α = 90 b = 60.293 β = 90 c = 96.079 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2005-02-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-D 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 80 99.8 0.057 41.2 9.3 22885 22843 30.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 0.314 5.98 8.7 2244
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1.7 52.2 21652 21652 1170 99.83 0.18709 0.18709 0.18612 0.20564 0.2038 RANDOM 18.839
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.11 0.22 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.669 r_dihedral_angle_4_deg 10.614 r_dihedral_angle_3_deg 10.607 r_dihedral_angle_1_deg 3.494 r_scangle_it 2.547 r_scbond_it 1.717 r_angle_refined_deg 1.286 r_mcbond_it 0.591 r_nbtor_refined 0.298 r_symmetry_vdw_refined 0.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.669 r_dihedral_angle_4_deg 10.614 r_dihedral_angle_3_deg 10.607 r_dihedral_angle_1_deg 3.494 r_scangle_it 2.547 r_scbond_it 1.717 r_angle_refined_deg 1.286 r_mcbond_it 0.591 r_nbtor_refined 0.298 r_symmetry_vdw_refined 0.204 r_nbd_refined 0.2 r_xyhbond_nbd_refined 0.136 r_symmetry_hbond_refined 0.116 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1310 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing