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Crystal Structure of the Serine Protease Domain of Sesbania Mosaic Virus polyprotein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8 298 0.2M Tris pH 8.0, 0.2M ammonium sulphate, 0.6M 1,6-hexane diol, 5mM mercaptoethanol, 4% glycerol, microbatch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.5 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.072 α = 90 b = 74.072 β = 90 c = 68.753 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH Osmic mirror 2004-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 92.73 0.055 32.13 7.12 9999 9272 45.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 56.5 0.266 3.8 4.09 554
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.4 20 9272 7759 459 93.06 0.25234 0.25234 0.2502 0.2479 0.28821 0.2857 RANDOM 39.831
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.78 1.39 2.78 -4.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.145 r_dihedral_angle_3_deg 16.53 r_dihedral_angle_4_deg 14.767 r_dihedral_angle_1_deg 6.65 r_scangle_it 1.672 r_angle_refined_deg 1.211 r_scbond_it 0.99 r_mcangle_it 0.924 r_mcbond_it 0.518 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.145 r_dihedral_angle_3_deg 16.53 r_dihedral_angle_4_deg 14.767 r_dihedral_angle_1_deg 6.65 r_scangle_it 1.672 r_angle_refined_deg 1.211 r_scbond_it 0.99 r_mcangle_it 0.924 r_mcbond_it 0.518 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.223 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.124 r_symmetry_hbond_refined 0.08 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1346 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MLPHARE phasing