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CRYSTAL STRUCTURE OF an atypical cyclophilin (peptidylprolyl cis-trans isomerase) (TM1367) FROM THERMOTOGA MARITIMA AT 1.90 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 4.2 277 0.2M NaCl, 50.0% PEG-200, 0.1M Phosphate Citrate, pH 4.2, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.31 46.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.083 α = 90 b = 132.875 β = 90 c = 41.319 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2005-03-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.89194, 0.97934 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.08 99.8 0.067 0.067 6.9 3.6 34243
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 99.8 0.6 0.6 1.2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 29.07 32474 1729 99.62 0.168 0.166 0.1789 0.21 0.2201 RANDOM 29.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.98 -2.4 1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.488 r_dihedral_angle_3_deg 13.84 r_dihedral_angle_4_deg 11.798 r_scangle_it 7.389 r_dihedral_angle_1_deg 6.874 r_scbond_it 5.581 r_mcangle_it 3.235 r_mcbond_it 2.43 r_angle_refined_deg 1.684 r_angle_other_deg 1.442
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.488 r_dihedral_angle_3_deg 13.84 r_dihedral_angle_4_deg 11.798 r_scangle_it 7.389 r_dihedral_angle_1_deg 6.874 r_scbond_it 5.581 r_mcangle_it 3.235 r_mcbond_it 2.43 r_angle_refined_deg 1.684 r_angle_other_deg 1.442 r_mcbond_other 0.677 r_symmetry_vdw_refined 0.293 r_symmetry_vdw_other 0.265 r_nbd_refined 0.198 r_nbtor_refined 0.18 r_nbd_other 0.177 r_xyhbond_nbd_refined 0.177 r_symmetry_hbond_refined 0.164 r_chiral_restr 0.096 r_nbtor_other 0.09 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2969 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing