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Structure of the E. coli ParC C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 HEPES, NaCl, Na acetate, NH4 acetate, PEG-4000, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.52 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.908 α = 86.11 b = 50.494 β = 86.9 c = 72.759 γ = 70.57
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-04-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1271, 0.9796, 1.0199 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 96.4 0.066 22 3.8 57955 57955 1 1 22.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 94.1 0.257 4.4 3.2 5659
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 20 1 54999 54999 2937 98.25 0.18509 0.18509 0.1835 0.1854 0.21548 0.2169 RANDOM 26.165
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.41 -0.02 0.53 0.22 -0.84 -1.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.197 r_dihedral_angle_4_deg 15.371 r_dihedral_angle_3_deg 14.569 r_dihedral_angle_1_deg 5.405 r_scangle_it 4.274 r_scbond_it 2.676 r_mcangle_it 1.518 r_angle_refined_deg 1.339 r_mcbond_it 1.03 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.197 r_dihedral_angle_4_deg 15.371 r_dihedral_angle_3_deg 14.569 r_dihedral_angle_1_deg 5.405 r_scangle_it 4.274 r_scbond_it 2.676 r_mcangle_it 1.518 r_angle_refined_deg 1.339 r_mcbond_it 1.03 r_nbtor_refined 0.307 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.164 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.146 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3705 Nucleic Acid Atoms Solvent Atoms 380 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing