X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP627760% saturated ammonium sulfate, 0.1M Bis-Tris pH 6.0, 7mM YbCl3 , VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.0840.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 32.322α = 90
b = 76.155β = 96.01
c = 37.073γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDADSC QUANTUM 42002-06-09MSINGLE WAVELENGTH
21x-ray110CCDADSC QUANTUM 42002-09-25MSINGLE WAVELENGTH
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X4A1.065NSLSX4A
2SYNCHROTRONNSLS BEAMLINE X9A0.9791NSLSX9A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.16201000.0769.7796709573-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.162.24930.2520.03

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.1619.739042904251498.970.16860.172640.168550.2424RANDOM19.05
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.01-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.157
r_dihedral_angle_4_deg17.422
r_dihedral_angle_3_deg16.602
r_dihedral_angle_1_deg6.117
r_scangle_it4.801
r_scbond_it3.047
r_angle_refined_deg2.253
r_mcangle_it1.924
r_mcbond_it1.674
r_nbtor_refined0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.157
r_dihedral_angle_4_deg17.422
r_dihedral_angle_3_deg16.602
r_dihedral_angle_1_deg6.117
r_scangle_it4.801
r_scbond_it3.047
r_angle_refined_deg2.253
r_mcangle_it1.924
r_mcbond_it1.674
r_nbtor_refined0.31
r_nbd_refined0.225
r_symmetry_hbond_refined0.221
r_symmetry_vdw_refined0.211
r_xyhbond_nbd_refined0.178
r_chiral_restr0.105
r_bond_refined_d0.016
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1558
Nucleic Acid Atoms
Solvent Atoms181
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing