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Regulation of Smurf2 Ubiquitin Ligase Activity by Anchoring the E2 to the HECT domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 298 Sodium Phosphate, Potassium Phosphate, and Sodium Acetate, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.08 60.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.359 α = 90 b = 70.509 β = 90 c = 152.351 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 2002-04-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 0.9799, 0.9997, 0.9568 APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 24.6 32394
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 24.57 30763 1631 97.79 0.20463 0.20233 0.2046 0.24792 0.2455 RANDOM 29.64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.07 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.092 r_dihedral_angle_4_deg 18.935 r_dihedral_angle_3_deg 18.028 r_dihedral_angle_1_deg 6.81 r_scangle_it 5.647 r_scbond_it 3.614 r_mcangle_it 2.29 r_angle_refined_deg 1.883 r_mcbond_it 1.254 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.092 r_dihedral_angle_4_deg 18.935 r_dihedral_angle_3_deg 18.028 r_dihedral_angle_1_deg 6.81 r_scangle_it 5.647 r_scbond_it 3.614 r_mcangle_it 2.29 r_angle_refined_deg 1.883 r_mcbond_it 1.254 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.223 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.203 r_symmetry_hbond_refined 0.187 r_chiral_restr 0.141 r_bond_refined_d 0.023 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3089 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing