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Calmodulin in complex with a mutant peptide from human DRP-1 kinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WRZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 295 PEG3350, MPD, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.52 α = 90 b = 34.03 β = 109.58 c = 73.85 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-05-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.813 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 20 99 0.044 19.9 3.6 12230 12230 -3 -3 30
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 2 97.5 0.332 3.8 3.4 1542
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1wrz 1.91 15 -3 12222 12222 611 99.29 0.1941 0.1941 0.19131 0.2033 0.24829 0.2614 RANDOM 38.722
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 -0.15 -0.32 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.842 r_dihedral_angle_3_deg 16.703 r_dihedral_angle_4_deg 14.468 r_dihedral_angle_1_deg 5.259 r_scangle_it 3.265 r_scbond_it 2.266 r_mcangle_it 1.754 r_mcbond_it 1.303 r_angle_refined_deg 1.115 r_angle_other_deg 0.798
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.842 r_dihedral_angle_3_deg 16.703 r_dihedral_angle_4_deg 14.468 r_dihedral_angle_1_deg 5.259 r_scangle_it 3.265 r_scbond_it 2.266 r_mcangle_it 1.754 r_mcbond_it 1.303 r_angle_refined_deg 1.115 r_angle_other_deg 0.798 r_nbd_refined 0.231 r_mcbond_other 0.23 r_symmetry_vdw_other 0.214 r_nbtor_refined 0.172 r_nbd_other 0.17 r_xyhbond_nbd_refined 0.152 r_symmetry_vdw_refined 0.136 r_metal_ion_refined 0.127 r_symmetry_hbond_refined 0.101 r_nbtor_other 0.085 r_chiral_restr 0.07 r_bond_refined_d 0.01 r_bond_other_d 0.005 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1312 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling MOLREP phasing