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Crystal structure of FtsY from Mycoplasma mycoides- space group P21212
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FTS PDB ENTRY 1FTS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 Ammonium sulfate, potassium tartrate, Magnesium Chloride, sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.07 40.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.735 α = 90 b = 101.129 β = 90 c = 42.533 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1999-09-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.91 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 56.8 95.7 0.069 22061 22061
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 79.5 0.321
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FTS 1.95 20 20702 18640 2062 92.75 0.213 0.21302 0.20728 0.2079 0.26429 0.2603 RANDOM 25.713
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.36 -0.87 2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.974 r_dihedral_angle_4_deg 16.332 r_dihedral_angle_3_deg 15.56 r_dihedral_angle_1_deg 5.541 r_scangle_it 4.554 r_scbond_it 3.033 r_mcangle_it 1.843 r_angle_refined_deg 1.624 r_mcbond_it 1.427 r_symmetry_hbond_refined 0.456
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.974 r_dihedral_angle_4_deg 16.332 r_dihedral_angle_3_deg 15.56 r_dihedral_angle_1_deg 5.541 r_scangle_it 4.554 r_scbond_it 3.033 r_mcangle_it 1.843 r_angle_refined_deg 1.624 r_mcbond_it 1.427 r_symmetry_hbond_refined 0.456 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.246 r_nbd_refined 0.223 r_xyhbond_nbd_refined 0.179 r_chiral_restr 0.106 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2404 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling CNS phasing