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X-ray structure of gene product from homo sapiens Hs.433573
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 10 MG/ML PROTEIN, 1.2 M SODIUM CITRATE, 0.100 M TRIS, pH 8.50, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3 58.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.547 α = 90 b = 116.809 β = 90 c = 123.635 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC HORIZONTAL SAGITALLY FOCUSING 2ND BENT MONOCHROMATOR CRYSTAL, VERTICAL BENT FOCUSING MIRROR 2005-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 98.6 0.106 13.353 12.3 31664
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 93.1 0.597 2.675 9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 50 31489 1607 97.8 0.19118 0.188 0.1874 0.245 0.2424 RANDOM 39.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 0.987 -0.637
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.545 r_dihedral_angle_4_deg 16.984 r_dihedral_angle_3_deg 16.302 r_scangle_it 7.9 r_dihedral_angle_1_deg 6.28 r_scbond_it 5.903 r_mcangle_it 3.338 r_mcbond_it 1.751 r_angle_refined_deg 1.422 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.545 r_dihedral_angle_4_deg 16.984 r_dihedral_angle_3_deg 16.302 r_scangle_it 7.9 r_dihedral_angle_1_deg 6.28 r_scbond_it 5.903 r_mcangle_it 3.338 r_mcbond_it 1.751 r_angle_refined_deg 1.422 r_nbtor_refined 0.31 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.201 r_symmetry_hbond_refined 0.196 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.098 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5296 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CNS phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction ARP/wARP model building