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Crystal Structure of A.fulgidus Rio1 serine protein kinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.3 293 PEG 4000, MES, ammonuim sulfate, pH 6.3, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.987 α = 90 b = 52.701 β = 108.89 c = 63.779 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-07-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.9794, 0.9795, 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 40 0.066 3.7 18480 18215
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.99 39.84 18480 17678 948 99.67 0.16683 0.16304 0.176 0.23569 0.1898 RANDOM 35.304
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.07 -0.01 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.484 r_dihedral_angle_3_deg 19.898 r_dihedral_angle_4_deg 18.441 r_scangle_it 13.056 r_scbond_it 10.671 r_dihedral_angle_1_deg 9.979 r_mcangle_it 9.218 r_mcbond_it 8.145 r_mcbond_other 2.657 r_angle_refined_deg 2.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.484 r_dihedral_angle_3_deg 19.898 r_dihedral_angle_4_deg 18.441 r_scangle_it 13.056 r_scbond_it 10.671 r_dihedral_angle_1_deg 9.979 r_mcangle_it 9.218 r_mcbond_it 8.145 r_mcbond_other 2.657 r_angle_refined_deg 2.096 r_angle_other_deg 0.885 r_symmetry_vdw_refined 0.291 r_symmetry_hbond_refined 0.276 r_symmetry_vdw_other 0.274 r_nbd_refined 0.268 r_nbd_other 0.254 r_xyhbond_nbd_refined 0.254 r_nbtor_refined 0.206 r_chiral_restr 0.163 r_xyhbond_nbd_other 0.117 r_nbtor_other 0.103 r_bond_refined_d 0.03 r_gen_planes_refined 0.01 r_bond_other_d r_gen_planes_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2045 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data scaling SHARP phasing