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Crystal structure of a putative metallo-beta-lactamase (tm0894) from Thermotoga maritima at 2.10 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 6.3 277 35.0% MPD, 0.1M Na,K-Phosphate, pH 6.3, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.23 70.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.783 α = 90 b = 127.343 β = 90 c = 152.224 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Flat mirror (vertical focusing), single crystal Si(111) bent monochromator (horizontal focusing) 2005-04-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.946415, 0.979413 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 29.93 98 0.048 0.048 10.6 3.4 100112
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 88.6 0.413 0.413 1.9 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 29.6 95035 5004 97.81 0.159 0.15855 0.157 0.1709 0.178 0.1897 RANDOM 44.232
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 -1.91 1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.324 r_dihedral_angle_4_deg 19.305 r_dihedral_angle_3_deg 14.598 r_dihedral_angle_1_deg 6.581 r_scangle_it 6.363 r_scbond_it 4.691 r_mcangle_it 2.586 r_mcbond_it 1.931 r_angle_refined_deg 1.366 r_angle_other_deg 0.812
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.324 r_dihedral_angle_4_deg 19.305 r_dihedral_angle_3_deg 14.598 r_dihedral_angle_1_deg 6.581 r_scangle_it 6.363 r_scbond_it 4.691 r_mcangle_it 2.586 r_mcbond_it 1.931 r_angle_refined_deg 1.366 r_angle_other_deg 0.812 r_mcbond_other 0.425 r_symmetry_vdw_other 0.318 r_nbd_refined 0.197 r_nbd_other 0.182 r_symmetry_vdw_refined 0.18 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.136 r_symmetry_hbond_refined 0.114 r_nbtor_other 0.084 r_chiral_restr 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6769 Nucleic Acid Atoms Solvent Atoms 454 Heterogen Atoms 73
Software Software Software Name Purpose REFMAC refinement SCALA data scaling MOSFLM data reduction CCP4 data scaling SOLVE phasing