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Rhodobacter capsulatus cytochrome bc1 complex with stigmatellin bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BCC PDB ENTRY 2BCC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.2 277 PEG-400, 0.1 M MgCl2, Heptanetriol, Cacodylate, Undecylmaltoside
Crystal Properties Matthews coefficient Solvent content 3.56 65.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.633 α = 90 b = 154.36 β = 113.57 c = 103.057 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2001-03-14 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2001-03-20 M SINGLE WAVELENGTH 3 1 x-ray 100 CCD ADSC QUANTUM 4 2001-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.0800 SSRL BL7-1 2 SYNCHROTRON ALS BEAMLINE 5.0.2 1.10 ALS 5.0.2 3 SYNCHROTRON ALS BEAMLINE 5.0.2 1.10 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 60 97.6 0.12 8.5 2.68 33596 -999.9 -3 100.43
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.5 3.63 94 0.28 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 2BCC 3.51 59.77 1.35 33205 1656 96.46 0.224 0.2207 0.2278 0.2887 0.2971 RANDOM 119.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.5362 f_angle_d 2.187 f_chiral_restr 0.0852 f_bond_d 0.0187 f_plane_restr 0.0118
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13482 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 419
Software Software Software Name Purpose PHENIX refinement CNS refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing