X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1ZQ0PDP ID 1ZQ0

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1Microbridge6.529822% PEG 1000 0.1 M Mes pH6.5, Microbridge, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
1.831.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.9α = 90
b = 89.2β = 90
c = 92.73γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42005-02-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.953720ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6664.280.05421.067.27985378100-3-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.661.7686.40.4842.413

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDP ID 1ZQ01.6664.28741907419039051000.190340.188190.23166RANDOM31.026
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.10.4-0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.665
r_dihedral_angle_4_deg24.262
r_dihedral_angle_3_deg15.065
r_dihedral_angle_1_deg6.216
r_scangle_it4.275
r_scbond_it2.799
r_angle_refined_deg1.792
r_mcangle_it1.586
r_mcbond_it0.999
r_angle_other_deg0.833
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.665
r_dihedral_angle_4_deg24.262
r_dihedral_angle_3_deg15.065
r_dihedral_angle_1_deg6.216
r_scangle_it4.275
r_scbond_it2.799
r_angle_refined_deg1.792
r_mcangle_it1.586
r_mcbond_it0.999
r_angle_other_deg0.833
r_symmetry_vdw_refined0.382
r_mcbond_other0.288
r_nbd_refined0.235
r_symmetry_vdw_other0.228
r_nbtor_refined0.202
r_symmetry_hbond_refined0.194
r_nbd_other0.187
r_xyhbond_nbd_refined0.154
r_chiral_restr0.15
r_nbtor_other0.095
r_bond_refined_d0.021
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5567
Nucleic Acid Atoms
Solvent Atoms447
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing