1ZKR

Crystal structure of the major cat allergen Fel d 1 (1+2)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529522.5% PEG3350, 0.5 M CaCl2, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
237

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.588α = 70.8
b = 42.996β = 80.56
c = 48.906γ = 81.53
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDADSC QUANTUM 42004-10-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I7111.087MAX III711

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.6436.5113581031695168092.930.192240.192240.190720.21994RANDOM17.241
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.01-0.01-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.812
r_scangle_it5.361
r_scbond_it3.27
r_mcangle_it1.984
r_angle_refined_deg1.967
r_mcbond_it1.168
r_angle_other_deg1.153
r_symmetry_hbond_refined0.33
r_symmetry_vdw_other0.27
r_xyhbond_nbd_refined0.255
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.812
r_scangle_it5.361
r_scbond_it3.27
r_mcangle_it1.984
r_angle_refined_deg1.967
r_mcbond_it1.168
r_angle_other_deg1.153
r_symmetry_hbond_refined0.33
r_symmetry_vdw_other0.27
r_xyhbond_nbd_refined0.255
r_nbd_refined0.243
r_nbd_other0.238
r_chiral_restr0.204
r_symmetry_vdw_refined0.148
r_nbtor_other0.088
r_bond_refined_d0.021
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2254
Nucleic Acid Atoms
Solvent Atoms241
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MOLREPphasing