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Crystal structure of Glycine cleavage system H protein (tm0212) from Thermotoga maritima at 1.65 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 4 277 1.0M LiCl, 30.0% PEG-6000, 0.1M Citrate pH 4.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.87 33.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.95 α = 90 b = 65.249 β = 90 c = 69.14 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Flat mirror (vertical focusing) 2005-04-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.946415, 0.979129, 0.979494 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 42.53 87.4 0.073 0.073 6.4 3.6 30875
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.64 40 0.367 0.367 2 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.65 42.53 26956 1433 94.6 0.227 0.22724 0.225 0.2263 0.27 0.2714 RANDOM 18.464
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 0.49 -0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.656 r_dihedral_angle_3_deg 12.109 r_dihedral_angle_4_deg 11.897 r_scangle_it 5.864 r_dihedral_angle_1_deg 5.287 r_scbond_it 3.808 r_mcangle_it 2.141 r_mcbond_it 1.209 r_angle_refined_deg 1.065 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.656 r_dihedral_angle_3_deg 12.109 r_dihedral_angle_4_deg 11.897 r_scangle_it 5.864 r_dihedral_angle_1_deg 5.287 r_scbond_it 3.808 r_mcangle_it 2.141 r_mcbond_it 1.209 r_angle_refined_deg 1.065 r_nbtor_refined 0.296 r_nbd_refined 0.193 r_symmetry_vdw_refined 0.186 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.112 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2011 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling autoSHARP phasing SHELXL refinement