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Structure of conserved protein PA5202 from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.4 293 magnesium acetate, Tris, PEG3350, glycerol, ethylene glycol, pH 8.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2 37.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.948 α = 90 b = 57.948 β = 90 c = 113.502 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD CUSTOM-MADE 2003-12-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97945, 0.97929, 0.96411 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 93 23192 23192
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.78 71.5 0.339 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 29 23191 22000 1191 92.95 0.16209 0.16035 0.1594 0.19378 0.1939 RANDOM 20.052
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.19 0.38 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.834 r_dihedral_angle_4_deg 17.152 r_dihedral_angle_3_deg 12.72 r_dihedral_angle_1_deg 5.043 r_scangle_it 3.855 r_scbond_it 2.677 r_mcangle_it 1.442 r_angle_refined_deg 1.225 r_mcbond_it 1.194 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.834 r_dihedral_angle_4_deg 17.152 r_dihedral_angle_3_deg 12.72 r_dihedral_angle_1_deg 5.043 r_scangle_it 3.855 r_scbond_it 2.677 r_mcangle_it 1.442 r_angle_refined_deg 1.225 r_mcbond_it 1.194 r_nbtor_refined 0.297 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.175 r_symmetry_hbond_refined 0.131 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.085 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1868 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction HKL-2000 data scaling SOLVE phasing RESOLVE phasing ARP/wARP model building