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Crystal structure of Transcriptional regulator, TETR family (tm1030) from Thermotoga maritima at 2.30 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 4.5 293 30.0% PEG-8000, 0.2M MgNO3, 0.1M Citrate pH 4.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 52.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.518 α = 90 b = 87.109 β = 110.73 c = 59.156 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Flat mirror 2005-04-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.918370, 0.979508 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 29.18 99.5 0.093 6 5 21323
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 95.8 0.612 1.2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 29.18 20200 1105 99.77 0.204 0.20399 0.201 0.2078 0.264 0.2734 RANDOM 45.288
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.01 -1.25 -0.03 1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.535 r_dihedral_angle_4_deg 21.102 r_dihedral_angle_3_deg 15.877 r_scangle_it 8.497 r_scbond_it 6.264 r_dihedral_angle_1_deg 5.647 r_mcangle_it 3.161 r_mcbond_it 2.511 r_angle_refined_deg 1.357 r_angle_other_deg 0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.535 r_dihedral_angle_4_deg 21.102 r_dihedral_angle_3_deg 15.877 r_scangle_it 8.497 r_scbond_it 6.264 r_dihedral_angle_1_deg 5.647 r_mcangle_it 3.161 r_mcbond_it 2.511 r_angle_refined_deg 1.357 r_angle_other_deg 0.81 r_mcbond_other 0.628 r_symmetry_vdw_other 0.262 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.228 r_nbtor_refined 0.192 r_nbd_other 0.161 r_symmetry_hbond_refined 0.111 r_nbtor_other 0.088 r_chiral_restr 0.08 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3268 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing