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Crystal structure of Oxidoreductase (TM0312) from Thermotoga maritima at 2.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7.5 277 8.0% Ethylene-Glycol, 10.0% PEG-8000, 0.1M HEPES pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.68 53.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.849 α = 90 b = 63.088 β = 104.88 c = 101.172 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2005-03-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97929 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 28.96 99.9 0.085 0.085 6.9 3.7 27566
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 100 0.374 0.374 2 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 28 26222 1382 99.7 0.196 0.19618 0.194 0.1955 0.237 0.2288 RANDOM 37.297
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.73 1.08 -0.14 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.919 r_dihedral_angle_4_deg 19.759 r_dihedral_angle_3_deg 15.032 r_scangle_it 6.619 r_dihedral_angle_1_deg 6.079 r_scbond_it 4.759 r_mcangle_it 2.376 r_angle_refined_deg 1.389 r_mcbond_it 1.296 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.919 r_dihedral_angle_4_deg 19.759 r_dihedral_angle_3_deg 15.032 r_scangle_it 6.619 r_dihedral_angle_1_deg 6.079 r_scbond_it 4.759 r_mcangle_it 2.376 r_angle_refined_deg 1.389 r_mcbond_it 1.296 r_nbtor_refined 0.306 r_symmetry_hbond_refined 0.277 r_metal_ion_refined 0.21 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.148 r_xyhbond_nbd_refined 0.135 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5026 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 118
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing