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Methionyl-tRNA formyltransferase from Clostridium thermocellum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified microbatch 5.6 298 2.5M amonium sulfate, 0.1M sodium citrate, pH 5.6, modified microbatch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.9 68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.396 α = 90 b = 85.396 β = 90 c = 104.27 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.9794 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 50 98.3 0.118 27555
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.05 83.6 0.535
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAS THROUGHOUT 2.05 30.192 24816 1222 99.919 0.21 0.2086 0.2616 0.237 0.2829 RANDOM 27.984
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.132 -0.132 0.264
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.597 r_dihedral_angle_4_deg 18.467 r_dihedral_angle_3_deg 12.092 r_dihedral_angle_1_deg 6.434 r_scangle_it 3.618 r_scbond_it 2.571 r_scangle_other 1.594 r_angle_refined_deg 1.429 r_mcangle_it 1.429 r_mcbond_it 1.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.597 r_dihedral_angle_4_deg 18.467 r_dihedral_angle_3_deg 12.092 r_dihedral_angle_1_deg 6.434 r_scangle_it 3.618 r_scbond_it 2.571 r_scangle_other 1.594 r_angle_refined_deg 1.429 r_mcangle_it 1.429 r_mcbond_it 1.266 r_angle_other_deg 0.816 r_scbond_other 0.741 r_mcangle_other 0.64 r_mcbond_other 0.263 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.204 r_symmetry_vdw_other 0.201 r_nbtor_refined 0.176 r_nbd_other 0.17 r_symmetry_hbond_refined 0.134 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.093 r_nbtor_other 0.078 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1809 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 17
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction