☰ Navigation Tabs
Crystal structure of Pfu-542154 conserved hypothetical protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified microbatch 7.7 293 Magnesium Acetate and PEG 3350, pH 7.7, modified microbatch, temperature 293K 2 modified microbatch 7.7 293 Magnesium Acetate, Methanol, and PEG 3350, pH 7.7, modified microbatch, temperature 293K 3 modified microbatch 7.7 293 Magnesium Acetate, Methanol, and PEG 3350, pH 7.7, modified microbatch, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.46 α = 90 b = 53.46 β = 90 c = 85.7 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-12-17 SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2005-01-05 SINGLE WAVELENGTH 3 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2005-03-04 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97 APS 22-ID 2 ROTATING ANODE RIGAKU MICROMAX-007 2.29 3 ROTATING ANODE RIGAKU FR-D 2.29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 1.7 50 98.1 0.045 9.5 15870
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 85.1 0.21 4.3 1344
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAS THROUGHOUT 1.7 46.27 15838 797 98.15 0.205 0.202 0.2809 0.252 0.3279 RANDOM 30.738
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.07 -0.13 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 46.929 r_dihedral_angle_4_deg 20.471 r_dihedral_angle_3_deg 14.45 r_dihedral_angle_1_deg 6.24 r_scangle_it 3.01 r_scbond_it 2.129 r_mcangle_it 1.47 r_angle_refined_deg 1.422 r_mcbond_it 0.981 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 46.929 r_dihedral_angle_4_deg 20.471 r_dihedral_angle_3_deg 14.45 r_dihedral_angle_1_deg 6.24 r_scangle_it 3.01 r_scbond_it 2.129 r_mcangle_it 1.47 r_angle_refined_deg 1.422 r_mcbond_it 0.981 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.276 r_nbd_refined 0.233 r_xyhbond_nbd_refined 0.151 r_symmetry_hbond_refined 0.114 r_chiral_restr 0.1 r_metal_ion_refined 0.027 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1074 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 20
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement