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Crystal structure of human hematopoietic tyrosine phosphatase (HePTP) catalytic domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.7 277 Sodium/potassium phosphate, acetate, pH 6.7, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.92 68.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.101 α = 90 b = 127.101 β = 90 c = 59.863 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-07-31 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.9797, 0.9791, 0.8856 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 0.08 8.3 47368 47311
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 20 44913 44913 2398 99.78 0.16257 0.16134 0.18584 0.2085 RANDOM 34.029
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.19 -0.38 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.978 r_dihedral_angle_4_deg 15.86 r_dihedral_angle_3_deg 12.726 r_scangle_it 6.336 r_dihedral_angle_1_deg 5.583 r_scbond_it 4.216 r_mcangle_it 2.852 r_mcbond_it 1.849 r_angle_refined_deg 1.329 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.978 r_dihedral_angle_4_deg 15.86 r_dihedral_angle_3_deg 12.726 r_scangle_it 6.336 r_dihedral_angle_1_deg 5.583 r_scbond_it 4.216 r_mcangle_it 2.852 r_mcbond_it 1.849 r_angle_refined_deg 1.329 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.207 r_symmetry_hbond_refined 0.186 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2217 Nucleic Acid Atoms Solvent Atoms 286 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing