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crystal structure of full-length 3'-exonuclease
Crystallization Crystal Properties Matthews coefficient Solvent content 4.74 74.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 215.843 α = 90 b = 215.843 β = 90 c = 114.468 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray AREA DETECTOR M SINGLE WAVELENGTH
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.998 19.96 97.77 61407 53948 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD & MR THROUGHOUT 2.998 19.96 3 61407 53948 6085 97.77 0.20118 0.20118 0.19852 0.1996 0.22472 0.2232 RANDOM 21.379
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 0.32 0.64 -0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.261 r_dihedral_angle_4_deg 20.272 r_dihedral_angle_3_deg 18.06 r_dihedral_angle_1_deg 5.624 r_scangle_it 2.283 r_scbond_it 1.365 r_angle_refined_deg 1.289 r_mcangle_it 0.871 r_mcbond_it 0.543 r_symmetry_hbond_refined 0.426
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.261 r_dihedral_angle_4_deg 20.272 r_dihedral_angle_3_deg 18.06 r_dihedral_angle_1_deg 5.624 r_scangle_it 2.283 r_scbond_it 1.365 r_angle_refined_deg 1.289 r_mcangle_it 0.871 r_mcbond_it 0.543 r_symmetry_hbond_refined 0.426 r_nbtor_refined 0.308 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.197 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7947 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 100
Software Software Software Name Purpose REFMAC refinement