X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1GZ6pdb entry 1GZ6

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52930.2M Lithium Sulphate monohydrate, 0.1M TRIS hydrochloride pH8.5, 30% w/v polyethylene glycol 4000, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.140.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.826α = 87.52
b = 50.771β = 87.07
c = 183.775γ = 70.75
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-03-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.91840SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1950.57476.26453564535
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.192.24729.71

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 1GZ62.1950.576453564535338376.230.19050.188120.23568RANDOM38.37
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.79-0.034.081.35-1.71-4.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.118
r_dihedral_angle_3_deg15.561
r_dihedral_angle_4_deg15.354
r_dihedral_angle_1_deg6.006
r_scangle_it2.189
r_scbond_it1.409
r_angle_refined_deg1.347
r_mcangle_it0.746
r_mcbond_it0.451
r_nbtor_refined0.298
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.118
r_dihedral_angle_3_deg15.561
r_dihedral_angle_4_deg15.354
r_dihedral_angle_1_deg6.006
r_scangle_it2.189
r_scbond_it1.409
r_angle_refined_deg1.347
r_mcangle_it0.746
r_mcbond_it0.451
r_nbtor_refined0.298
r_symmetry_vdw_refined0.201
r_nbd_refined0.199
r_symmetry_hbond_refined0.181
r_xyhbond_nbd_refined0.133
r_chiral_restr0.093
r_bond_refined_d0.012
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13513
Nucleic Acid Atoms
Solvent Atoms343
Heterogen Atoms264

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing