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x-ray crystal structure of apo-OhrRC15S in reduced form: MarR family protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 298 30 to 33 % PEG 1450, 0.1 M ammonium acetate (or sodium acetate), and 0.1M sodium acetate, pH 4.5., VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.74 26.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.355 α = 90 b = 55.355 β = 90 c = 77.242 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-07-01 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 210 2003-09-30 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9794 ALS 8.2.1 2 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9794, 0.9184, 0.9796 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.5 45.175 7251 4532 2 2 25.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 45 4491 4484 482 99.6 0.223 0.223 0.2332 0.305 0.2454 RANDOM 36.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.5 -3.5 7.01
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.4 c_scangle_it 7.39 c_scbond_it 5.4 c_mcangle_it 4.93 c_mcbond_it 3.43 c_angle_deg 1.2 c_improper_angle_d 0.78 c_bond_d 0.007 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.4 c_scangle_it 7.39 c_scbond_it 5.4 c_mcangle_it 4.93 c_mcbond_it 3.43 c_angle_deg 1.2 c_improper_angle_d 0.78 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1101 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling SOLVE phasing CNS refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling