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Crystal structure of human AK1A in complex with AP5A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 MES, PEG550, Zinksulphate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.5 50.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.194 α = 90 b = 46.259 β = 116.01 c = 119.576 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.90 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 100 0.035 21.8 7.1 49395
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 95.7 0.1 9.9 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 50 44688 44688 2379 95.31 0.17166 0.16916 0.1824 0.21832 0.2253 RANDOM 19.457
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.1 -0.41 2.4 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.869 r_dihedral_angle_4_deg 14.356 r_dihedral_angle_3_deg 13.679 r_scangle_it 6.538 r_dihedral_angle_1_deg 5.164 r_scbond_it 4.909 r_mcangle_it 2.719 r_mcbond_it 2 r_angle_refined_deg 1.622 r_angle_other_deg 0.851
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.869 r_dihedral_angle_4_deg 14.356 r_dihedral_angle_3_deg 13.679 r_scangle_it 6.538 r_dihedral_angle_1_deg 5.164 r_scbond_it 4.909 r_mcangle_it 2.719 r_mcbond_it 2 r_angle_refined_deg 1.622 r_angle_other_deg 0.851 r_mcbond_other 0.657 r_symmetry_vdw_other 0.244 r_symmetry_vdw_refined 0.232 r_symmetry_hbond_refined 0.214 r_xyhbond_nbd_refined 0.213 r_nbd_refined 0.211 r_nbd_other 0.18 r_nbtor_refined 0.171 r_symmetry_metal_ion_refined 0.162 r_metal_ion_refined 0.084 r_nbtor_other 0.082 r_chiral_restr 0.08 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4471 Nucleic Acid Atoms Solvent Atoms 458 Heterogen Atoms 194
Software Software Software Name Purpose REFMAC refinement EVAL15 data reduction SADABS data scaling PHASER phasing