☰ Navigation Tabs
Crystal structure of probable Polysaccharide deacetylase from Pseudomonas aeruginosa PAO1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 298 PEG4K, i-PrOH, NaCitrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.7 53.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.653 α = 60.71 b = 101.773 β = 61.24 c = 100.99 γ = 89.9
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2004-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97945 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 0.082 16.7 323545 304779
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 71.2 0.303 2.87 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.71 50 323545 289370 15394 95.9 0.15224 0.15105 0.1623 0.17461 0.1839 RANDOM 9.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.19 -0.25 0.13 -0.26 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.234 r_dihedral_angle_4_deg 15.11 r_dihedral_angle_3_deg 13.555 r_dihedral_angle_1_deg 6.098 r_scangle_it 2.79 r_scbond_it 1.95 r_angle_refined_deg 1.213 r_mcangle_it 1.01 r_mcbond_it 0.939 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.234 r_dihedral_angle_4_deg 15.11 r_dihedral_angle_3_deg 13.555 r_dihedral_angle_1_deg 6.098 r_scangle_it 2.79 r_scbond_it 1.95 r_angle_refined_deg 1.213 r_mcangle_it 1.01 r_mcbond_it 0.939 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.228 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.164 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19654 Nucleic Acid Atoms Solvent Atoms 2141 Heterogen Atoms 150
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling HKL-2000 data scaling