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Structure Of Human ADP-Ribosylation Factor 4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HUR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 291 sodium citrate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.77 α = 90 b = 64.77 β = 90 c = 155.559 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV CONFOCAL MAXFLUX 2005-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 32.38 0.098 16 7.2 9676 9676 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.8 100 0.357 6 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1HUR 2.7 32.38 9651 9184 466 99.84 0.22419 0.22166 0.2201 0.27269 0.2681 RANDOM 40.803
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 1.18 -2.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.67 r_dihedral_angle_4_deg 18.82 r_dihedral_angle_3_deg 15.955 r_dihedral_angle_1_deg 5.124 r_scangle_it 1.348 r_angle_refined_deg 1.226 r_mcangle_it 1.102 r_scbond_it 0.799 r_mcbond_it 0.605 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.67 r_dihedral_angle_4_deg 18.82 r_dihedral_angle_3_deg 15.955 r_dihedral_angle_1_deg 5.124 r_scangle_it 1.348 r_angle_refined_deg 1.226 r_mcangle_it 1.102 r_scbond_it 0.799 r_mcbond_it 0.605 r_nbtor_refined 0.311 r_symmetry_hbond_refined 0.291 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.07 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2800 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction CrystalClear data scaling AMoRE phasing