☰ Navigation Tabs
Crystal Structure Of Human Fibroblast Activation Protein alpha
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R9M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 pH 7.6, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 3.2 61.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.295 α = 90 b = 152.58 β = 90 c = 214.855 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 98 CCD ADSC QUANTUM 4r SINGLE CRYSTAL, SINGLE MIRROR 2002-08-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 0.095 12 3.4 70612
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 90.6 0.507 1.9 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1R9M 2.6 50 66976 3558 97.68 0.22619 0.22313 0.2216 0.28257 0.2738 RANDOM 29.266
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.14 6 -7.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.151 r_mcangle_it 1.929 r_scangle_it 1.857 r_angle_refined_deg 1.382 r_scbond_it 1.171 r_mcbond_it 1.143 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.159 r_symmetry_hbond_refined 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.151 r_mcangle_it 1.929 r_scangle_it 1.857 r_angle_refined_deg 1.382 r_scbond_it 1.171 r_mcbond_it 1.143 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.159 r_symmetry_hbond_refined 0.14 r_chiral_restr 0.098 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11778 Nucleic Acid Atoms Solvent Atoms 628 Heterogen Atoms 168
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing