☰ Navigation Tabs
Inositol 1,3,4-trisphosphate 5/6-Kinase in complex with Mg2+/AMP-PCP/Ins(1,3,4)P3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 276 25% PEG 3350, 01. bis-tris, 10 mM DTT, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 276K
Crystal Properties Matthews coefficient Solvent content 2.18 43.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.237 α = 90 b = 94.751 β = 110.4 c = 47.361 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 M MAD 2 1 x-ray CCD ADSC QUANTUM 315 M MAD 3 1 CCD MARMOSAIC 300 mm CCD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.9687,1.0095,1.007,1.008 NSLS X25 2 SYNCHROTRON ALS BEAMLINE 8.2.1 1.8997,1.8453 ALS 8.2.1 3 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.22 50 86414
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.22 1.26 95.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.22 47.35 81139 4267 94.42 0.19891 0.19775 0.1999 0.221 0.2024 RANDOM 15.999
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.15 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.343 r_dihedral_angle_3_deg 11.063 r_dihedral_angle_4_deg 8.122 r_dihedral_angle_1_deg 5.749 r_scangle_it 2.687 r_scbond_it 1.792 r_angle_refined_deg 1.248 r_mcangle_it 1.178 r_mcbond_it 0.73 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.343 r_dihedral_angle_3_deg 11.063 r_dihedral_angle_4_deg 8.122 r_dihedral_angle_1_deg 5.749 r_scangle_it 2.687 r_scbond_it 1.792 r_angle_refined_deg 1.248 r_mcangle_it 1.178 r_mcbond_it 0.73 r_nbtor_refined 0.302 r_nbd_refined 0.192 r_symmetry_vdw_refined 0.151 r_xyhbond_nbd_refined 0.107 r_symmetry_hbond_refined 0.105 r_chiral_restr 0.078 r_metal_ion_refined 0.033 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2504 Nucleic Acid Atoms Solvent Atoms 440 Heterogen Atoms 57
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling SOLVE phasing REFMAC refinement HKL-2000 data reduction