1Z0V

Crystal Structure of A. fulgidus Lon proteolytic domain


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5295PEG 400,calcium acetate,sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.244.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.454α = 90
b = 86.279β = 92.3
c = 137.966γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2004-09-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.00APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
135098.92268222682-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
133.07598.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT31522268221365114899.130.219470.214680.31016RANDOM18.042
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.921.53-4.051.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg44.016
r_dihedral_angle_3_deg25.161
r_dihedral_angle_4_deg21.753
r_dihedral_angle_1_deg10.725
r_scangle_it5.376
r_scbond_it3.716
r_angle_refined_deg3.281
r_mcangle_it2.493
r_mcbond_it1.882
r_symmetry_vdw_refined0.379
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg44.016
r_dihedral_angle_3_deg25.161
r_dihedral_angle_4_deg21.753
r_dihedral_angle_1_deg10.725
r_scangle_it5.376
r_scbond_it3.716
r_angle_refined_deg3.281
r_mcangle_it2.493
r_mcbond_it1.882
r_symmetry_vdw_refined0.379
r_nbtor_refined0.336
r_nbd_refined0.315
r_chiral_restr0.208
r_xyhbond_nbd_refined0.207
r_symmetry_hbond_refined0.099
r_bond_refined_d0.041
r_gen_planes_refined0.012
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8733
Nucleic Acid Atoms
Solvent Atoms503
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
SCALEPACKdata scaling
EPMRphasing