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Crystal Structure of putative N-acetylmannosamine-6-P epimerase from Streptococcus pyogenes (APC29713) Structural genomics, MCSG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 273 ammonium sulfate, BIS-TRIS buffer, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.69 53.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.64 α = 90 b = 83.521 β = 90 c = 104.256 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 horizontal-focussing Si-111 double-crystal monochromator and vertical-focusing mirror 2004-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.979484 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 98.4 0.123 26 13 69461 68381 1 1 30.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 98.2 0.809 2.4 10.1 6793
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 50 69461 65953 3508 99.53 0.19407 0.19337 0.1899 0.20717 0.2048 RANDOM 22.286
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.9 0.04 -0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.399 r_dihedral_angle_4_deg 13.491 r_dihedral_angle_3_deg 11.616 r_dihedral_angle_1_deg 4.769 r_scangle_it 2.54 r_scbond_it 1.734 r_angle_refined_deg 1.026 r_mcangle_it 0.787 r_mcbond_it 0.471 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.399 r_dihedral_angle_4_deg 13.491 r_dihedral_angle_3_deg 11.616 r_dihedral_angle_1_deg 4.769 r_scangle_it 2.54 r_scbond_it 1.734 r_angle_refined_deg 1.026 r_mcangle_it 0.787 r_mcbond_it 0.471 r_nbtor_refined 0.299 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.17 r_xyhbond_nbd_refined 0.101 r_symmetry_hbond_refined 0.093 r_chiral_restr 0.066 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3452 Nucleic Acid Atoms Solvent Atoms 679 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing O model building Coot model building CCP4 phasing ARP/wARP model building