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Crystal Structure of Kinase Pim1 in complex with (3E)-3-[(4-HYDROXYPHENYL)IMINO]-1H-INDOL-2(3H)-ONE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 Na Acetate, Imidazole, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.8 67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.592 α = 90 b = 96.592 β = 90 c = 80.556 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 83.7 97.6 0.057 0.057 8.9 3.9 29990 1.5 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.07 99.2 96.8 0.369 0.369 2 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 83.65 1.5 27652 1459 97.61 0.219 0.218 0.218 0.251 0.2738 RANDOM 28.056
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.21 0.6 1.21 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.089 r_scangle_it 2.625 r_angle_refined_deg 1.623 r_scbond_it 1.601 r_mcangle_it 1.076 r_angle_other_deg 0.826 r_mcbond_it 0.594 r_symmetry_vdw_other 0.307 r_nbd_other 0.235 r_nbd_refined 0.202
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.089 r_scangle_it 2.625 r_angle_refined_deg 1.623 r_scbond_it 1.601 r_mcangle_it 1.076 r_angle_other_deg 0.826 r_mcbond_it 0.594 r_symmetry_vdw_other 0.307 r_nbd_other 0.235 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.149 r_symmetry_vdw_refined 0.132 r_symmetry_hbond_refined 0.111 r_chiral_restr 0.085 r_nbtor_other 0.08 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2230 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 23
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling MOLREP phasing