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Crystal structure of actin in complex with swinholide A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 small-scale batch 8.5 277 dimethyl PEG 5000, HEPPS, MgCl2, TCEP, NaN3, pH 8.5, small-scale batch, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3 58.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68 α = 90 b = 76.8 β = 101.2 c = 98.4 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2002-08-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 50 99.4 0.055 24.9 3.4 66550 66151 29.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.08 95.7 0.301 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.01 50 63056 62779 3353 99.56 0.186 0.186 0.184 0.1914 0.219 0.221 RANDOM 23.922
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 1.87 -1.05 2.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.12 r_scangle_it 4.43 r_scbond_it 2.926 r_mcangle_it 1.709 r_angle_other_deg 1.672 r_angle_refined_deg 1.648 r_mcbond_it 0.962 r_symmetry_vdw_other 0.357 r_symmetry_vdw_refined 0.305 r_symmetry_hbond_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.12 r_scangle_it 4.43 r_scbond_it 2.926 r_mcangle_it 1.709 r_angle_other_deg 1.672 r_angle_refined_deg 1.648 r_mcbond_it 0.962 r_symmetry_vdw_other 0.357 r_symmetry_vdw_refined 0.305 r_symmetry_hbond_refined 0.295 r_nbd_other 0.233 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.117 r_metal_ion_refined 0.1 r_nbtor_other 0.091 r_bond_refined_d 0.015 r_gen_planes_other 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5591 Nucleic Acid Atoms Solvent Atoms 282 Heterogen Atoms 171
Software Software Software Name Purpose SCALEPACK data scaling MOLREP phasing REFMAC refinement