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Crystal structure of peroxisomal trans 2-enoyl CoA reductase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VL8 PDB entry 1VL8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 294 Ammonium sulphate, Sodium chloride, Sodium cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.2 43.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.152 α = 90 b = 119.014 β = 90 c = 119.909 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 47.35 98.3 0.046 42 10 88511 88511 33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2.06 96.9 0.445 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1VL8 1.9 47 81985 81985 4302 97.49 0.20621 0.20621 0.20417 0.2127 0.24459 0.2474 RANDOM 33.504
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.773 r_dihedral_angle_3_deg 13.487 r_dihedral_angle_1_deg 12.739 r_dihedral_angle_4_deg 11.128 r_scangle_it 3.659 r_scbond_it 2.531 r_angle_refined_deg 1.676 r_mcangle_it 1.648 r_mcbond_it 1.006 r_angle_other_deg 0.879
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.773 r_dihedral_angle_3_deg 13.487 r_dihedral_angle_1_deg 12.739 r_dihedral_angle_4_deg 11.128 r_scangle_it 3.659 r_scbond_it 2.531 r_angle_refined_deg 1.676 r_mcangle_it 1.648 r_mcbond_it 1.006 r_angle_other_deg 0.879 r_mcbond_other 0.422 r_symmetry_hbond_refined 0.349 r_nbd_refined 0.217 r_nbtor_refined 0.183 r_nbd_other 0.18 r_xyhbond_nbd_refined 0.173 r_symmetry_vdw_other 0.172 r_symmetry_vdw_refined 0.169 r_chiral_restr 0.106 r_nbtor_other 0.089 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8288 Nucleic Acid Atoms Solvent Atoms 374 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing