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Structure Of Ytnj From Bacillus Subtilis in complex with FMN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 1.5M NACITRATE, 0.1M HEPES PH 7.5, soaked in .01M FMN, CRYO: 30% glucose, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.7 66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.254 α = 90 b = 86.254 β = 90 c = 194.64 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID .979 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 93.3 0.095 13.1 5.57 17468 17468 -3 64.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 94.2 0.35 2.5 1717
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.81 20 17394 17329 899 93.18 0.186 0.18553 0.18221 0.1938 0.25241 0.2584 RANDOM 54.603
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.86 2.86 -5.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.3 r_dihedral_angle_3_deg 20.16 r_dihedral_angle_4_deg 18.264 r_dihedral_angle_1_deg 7.461 r_scangle_it 5.261 r_scbond_it 3.378 r_mcangle_it 2.066 r_angle_refined_deg 1.926 r_mcbond_it 1.465 r_angle_other_deg 0.829
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.3 r_dihedral_angle_3_deg 20.16 r_dihedral_angle_4_deg 18.264 r_dihedral_angle_1_deg 7.461 r_scangle_it 5.261 r_scbond_it 3.378 r_mcangle_it 2.066 r_angle_refined_deg 1.926 r_mcbond_it 1.465 r_angle_other_deg 0.829 r_symmetry_vdw_other 0.283 r_mcbond_other 0.259 r_nbd_refined 0.226 r_nbd_other 0.216 r_nbtor_refined 0.199 r_xyhbond_nbd_refined 0.169 r_symmetry_hbond_refined 0.126 r_symmetry_vdw_refined 0.113 r_chiral_restr 0.108 r_nbtor_other 0.103 r_xyhbond_nbd_other 0.04 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_gen_planes_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3095 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing