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Solution structure of the conserved protein from the gene locus MMP0076 of Methanococcus maripaludis. Northeast Structural Genomics target MrR5.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_13C-separated_NOESY 1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.5 5% D2O/95% H2O 100 mM NaCl 4.5 atmospheric atm 293 2 3D_15N-separated_NOESY 1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.5 5% D2O/95% H2O 100 mM NaCl 4.5 atmospheric atm 293 3 HcCH-COSY, 1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.5 5% D2O/95% H2O 100 mM NaCl 4.5 atmospheric atm 293 4 Hi-Res CH-HSQC(st. Me assign), HNHA, HetNOE 1.1mM MrR5 U-15N, 5%13C, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.5 5% D2O/95% H2O 100 mM NaCl 4.5 atmospheric atm 293 5 TR backbone, H,C_TOCSYs, NH-HSQC 1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.5 5% D2O/95% H2O 100 mM NaCl 4.5 atmospheric atm 293
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Bruker AVANCE 500
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 56 Conformers Submitted Total Number 10 Representative Model 1 (lowest target function)
Additional NMR Experimental Information Details CS assign: AutoAssign (bb), HcCH-cosy + TOCSYs (sc), AutoStructure (noe), Hyper (Dihe), Dyana,Xplor,CNS(imp. H2O) (sim. annealing) AutoQF quality factor calc.
Computation: NMR Software # Classification Version Software Name Author 1 collection VNMR 6.1 Varian 2 collection XwinNMR 3.5 Bruker Biospin 3 processing NMRPipe 2.1 Delaglio (NIH) 4 data analysis Sparky 3.91 Goddard (UCSF) 5 data analysis AutoAssign 1.15.1 Zimmerman (Rutgers) 6 structure solution AutoStructure 2.1.0 Huang (Rutgers) 7 refinement AutoStructure 2.1.0 Huang (Rutgers)