1YU0

Major Tropism Determinant P1 Variant

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	7.5	298	PEG 550 MME, HEPES, calcium chloride, pH 7.5, VAPOR DIFFUSION, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
3.1	60.8

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 92.258	α = 90
b = 92.258	β = 90
c = 102.231	γ = 120

Symmetry
Space Group	P 63

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100					M	SINGLE WAVELENGTH
2	1	x-ray	100					M	MAD
1,2	1

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 19-ID	1.1055	APS	19-ID
2	SYNCHROTRON	APS BEAMLINE 19-ID	0.97910, 0.97932, 0.95372	APS	19-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1,2	1.56	50	98.6			69212	69212		-3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1,2	1.56	1.62	100

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	1.56	20.33	69212	69212	3496	98.59	0.12843	0.12843	0.12755	0.14478	RANDOM	8.629

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.589
r_dihedral_angle_4_deg	18.169
r_dihedral_angle_3_deg	10.363
r_dihedral_angle_1_deg	6.301
r_scangle_it	2.447
r_scbond_it	1.791
r_angle_refined_deg	1.229
r_mcangle_it	1.081
r_angle_other_deg	0.765
r_mcbond_it	0.689
r_symmetry_vdw_other	0.212
r_nbd_refined	0.206
r_symmetry_vdw_refined	0.202
r_nbd_other	0.187
r_nbtor_refined	0.183
r_symmetry_hbond_refined	0.156
r_mcbond_other	0.156
r_metal_ion_refined	0.115
r_symmetry_metal_ion_refined	0.115
r_xyhbond_nbd_refined	0.103
r_nbtor_other	0.084
r_chiral_restr	0.074
r_bond_refined_d	0.009
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2758
Nucleic Acid Atoms
Solvent Atoms	488
Heterogen Atoms	2

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
AMoRE	phasing