☰ Navigation Tabs
PAB0955 crystal structure : a GTPase in Apo form from Pyrococcus abyssi
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 15% PEG 4000, 3% dioxane, 0.1M tri-sodium citrate dihydrate, 20mM DTT, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.03 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.29 α = 90 b = 60.29 β = 90 c = 117.11 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50 98.34 0.054 0.054 22.46 10.1 13967 13737 40.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.23 95 0.328 0.328 5.31 7.6 1338
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.15 15 13967 13681 685 98.35 0.23535 0.23535 0.231 0.24 0.299 0.25 RANDOM 53.557
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.34 1.67 3.34 -5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.149 r_dihedral_angle_4_deg 19.756 r_dihedral_angle_3_deg 18.033 r_dihedral_angle_1_deg 6.078 r_scangle_it 2.173 r_mcangle_it 2.003 r_scbond_it 1.544 r_angle_refined_deg 1.246 r_mcbond_it 1.177 r_symmetry_hbond_refined 0.536
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.149 r_dihedral_angle_4_deg 19.756 r_dihedral_angle_3_deg 18.033 r_dihedral_angle_1_deg 6.078 r_scangle_it 2.173 r_mcangle_it 2.003 r_scbond_it 1.544 r_angle_refined_deg 1.246 r_mcbond_it 1.177 r_symmetry_hbond_refined 0.536 r_nbtor_refined 0.333 r_symmetry_vdw_refined 0.308 r_nbd_refined 0.271 r_xyhbond_nbd_refined 0.263 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2011 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ProDC data collection XDS data scaling SOLVE phasing