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Crystal structure of Src kinase domain in complex with Purvalanol A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 297 20% ethylene glycol , pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.95 58.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.698 α = 100.61 b = 63.078 β = 88.86 c = 74.055 γ = 89.89
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 21.8 93 0.123 4.6 18966
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.85 95 0.469 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 12 14312 742 92.88 0.22187 0.21704 0.31322 RANDOM 44.857
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.32 1.3 -0.11 -1.81 -0.1 5.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.741 r_scangle_it 2.196 r_angle_refined_deg 1.692 r_scbond_it 1.253 r_mcangle_it 1.188 r_angle_other_deg 0.912 r_mcbond_it 0.638 r_symmetry_vdw_other 0.245 r_nbd_other 0.222 r_nbd_refined 0.219
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.741 r_scangle_it 2.196 r_angle_refined_deg 1.692 r_scbond_it 1.253 r_mcangle_it 1.188 r_angle_other_deg 0.912 r_mcbond_it 0.638 r_symmetry_vdw_other 0.245 r_nbd_other 0.222 r_nbd_refined 0.219 r_xyhbond_nbd_refined 0.212 r_symmetry_hbond_refined 0.164 r_symmetry_vdw_refined 0.159 r_nbtor_other 0.086 r_chiral_restr 0.08 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4169 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing