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Crystal structure of putative nucleotidyltransferase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 297 PEG3350, Ammonium Sulphate,B-Tris, pH 5.5, VAPOR DIFFUSION, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.3 46.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.35 α = 90 b = 38.35 β = 90 c = 244.082 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-11-24 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2004-11-24 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97775 APS 19-ID 2 SYNCHROTRON APS BEAMLINE 19-ID 0.97774, 0.97970 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 50 97.9 15124 14806
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2 2.07 79.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.016 50 14755 13974 744 99.75 0.21916 0.2166 0.2166 0.2172 0.26746 0.2668 RANDOM 33.119
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.02 0.05 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.881 r_dihedral_angle_4_deg 20.626 r_dihedral_angle_3_deg 17.296 r_dihedral_angle_1_deg 8.987 r_scangle_it 4.468 r_scbond_it 3.025 r_angle_refined_deg 1.868 r_mcangle_it 1.865 r_mcbond_it 1.221 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.881 r_dihedral_angle_4_deg 20.626 r_dihedral_angle_3_deg 17.296 r_dihedral_angle_1_deg 8.987 r_scangle_it 4.468 r_scbond_it 3.025 r_angle_refined_deg 1.868 r_mcangle_it 1.865 r_mcbond_it 1.221 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.268 r_nbd_refined 0.236 r_xyhbond_nbd_refined 0.195 r_chiral_restr 0.164 r_symmetry_hbond_refined 0.119 r_bond_refined_d 0.021 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1564 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling HKL-3000 phasing