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Crystal Structure of the Conserved Protein of Unknown Function PA5104 from Pseudomonas aeruginosa PAO1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 PEG4000, magnesium chloride, Tris, L-lysine, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.514 α = 90 b = 67.209 β = 111.35 c = 82.768 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2004-12-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793, 0.9794, 0.956 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 77.15 0.071 12.4 8.1 84910 82845
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.7 88.7 0.466 2.7 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.64 77.15 74055 74054 8261 96.07 0.19906 0.19409 0.194 0.24328 0.2433 RANDOM 24.223
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.1 0.83 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.982 r_dihedral_angle_4_deg 20.324 r_dihedral_angle_3_deg 15.814 r_scangle_it 4.245 r_mcangle_it 3.009 r_scbond_it 2.961 r_dihedral_angle_1_deg 2.421 r_mcbond_it 1.774 r_angle_refined_deg 1.763 r_nbd_refined 0.524
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.982 r_dihedral_angle_4_deg 20.324 r_dihedral_angle_3_deg 15.814 r_scangle_it 4.245 r_mcangle_it 3.009 r_scbond_it 2.961 r_dihedral_angle_1_deg 2.421 r_mcbond_it 1.774 r_angle_refined_deg 1.763 r_nbd_refined 0.524 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.272 r_xyhbond_nbd_refined 0.187 r_symmetry_hbond_refined 0.178 r_chiral_restr 0.131 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5912 Nucleic Acid Atoms Solvent Atoms 773 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling SHARP phasing