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Structure of NNQQNY from yeast prion Sup35 with zinc acetate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 293 ZINC SULFATE, SODIUM ACETATE, HEPES, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.00
Crystal Properties Matthews coefficient Solvent content 1.38 10.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 21.153 α = 90 b = 4.87 β = 102.93 c = 23.13 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH ELLIPSOIDAL MIRROR 2004-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID13 ESRF ID13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 80 97.1 0.146 9.8 3.8 2166 11.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.4 88.8 0.426 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 22.54 1250 1250 52 97.9 0.103 0.102 0.1154 0.152 0.1655 RANDOM 5.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 0.28 -0.44 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 59.937 r_dihedral_angle_3_deg 9.092 r_dihedral_angle_1_deg 8.504 r_scangle_it 1.715 r_scbond_it 1.394 r_angle_refined_deg 1.077 r_mcangle_it 0.895 r_angle_other_deg 0.728 r_mcbond_it 0.663 r_symmetry_vdw_other 0.339
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 59.937 r_dihedral_angle_3_deg 9.092 r_dihedral_angle_1_deg 8.504 r_scangle_it 1.715 r_scbond_it 1.394 r_angle_refined_deg 1.077 r_mcangle_it 0.895 r_angle_other_deg 0.728 r_mcbond_it 0.663 r_symmetry_vdw_other 0.339 r_mcbond_other 0.228 r_nbd_refined 0.225 r_xyhbond_nbd_refined 0.219 r_nbtor_refined 0.194 r_nbd_other 0.187 r_symmetry_hbond_refined 0.181 r_symmetry_vdw_refined 0.171 r_chiral_restr 0.092 r_nbtor_other 0.083 r_metal_ion_refined 0.039 r_symmetry_metal_ion_refined 0.016 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_gen_planes_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 55 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MLPHARE phasing