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Trypanosoma cruzi farnesyl diphosphate synthase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Selenomethionine replaced protein model (MAD)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIQUID DIFFUSION 4.6 293 pH 4.6, LIQUID DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.3 47.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.925 α = 90 b = 57.925 β = 90 c = 397.697 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.97929 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 65.94 21828
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Selenomethionine replaced protein model (MAD) 2.1 65.94 21828 21828 1172 93.95 0.17581 0.17308 0.22686 RANDOM 27.413
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 0.28 0.56 -0.85
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.954 r_dihedral_angle_1_deg 5.644 r_scbond_it 3.811 r_mcangle_it 2.385 r_angle_refined_deg 2.088 r_mcbond_it 1.361 r_angle_other_deg 1.056 r_symmetry_vdw_other 0.327 r_nbd_other 0.251 r_symmetry_vdw_refined 0.234
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.954 r_dihedral_angle_1_deg 5.644 r_scbond_it 3.811 r_mcangle_it 2.385 r_angle_refined_deg 2.088 r_mcbond_it 1.361 r_angle_other_deg 1.056 r_symmetry_vdw_other 0.327 r_nbd_other 0.251 r_symmetry_vdw_refined 0.234 r_nbd_refined 0.231 r_symmetry_hbond_refined 0.225 r_xyhbond_nbd_refined 0.193 r_chiral_restr 0.144 r_nbtor_other 0.093 r_bond_refined_d 0.031 r_gen_planes_refined 0.012 r_gen_planes_other 0.007 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2873 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing