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Crystal Structure of Conserved SPY1581 Protein of Unknown Function from Streptococcus pyogenes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 293 30% PEG 3000, 0.1 M Sodium Acetate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 4.50
Crystal Properties Matthews coefficient Solvent content 2.3 45.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.897 α = 90 b = 39.897 β = 90 c = 144.758 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2004-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 40 99.1 0.137 33.6 23.4 8535
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 94.8 0.746 2.62 12.7
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD 2 39.9 8492 8492 843 99.3 0.192 0.19 0.1897 0.248 0.2094 31.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.42 1.42 -2.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.072 r_dihedral_angle_4_deg 18.461 r_dihedral_angle_3_deg 13.349 r_dihedral_angle_1_deg 6.634 r_scangle_it 3.914 r_scbond_it 2.41 r_angle_refined_deg 1.434 r_mcangle_it 1.229 r_mcbond_it 0.945 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.072 r_dihedral_angle_4_deg 18.461 r_dihedral_angle_3_deg 13.349 r_dihedral_angle_1_deg 6.634 r_scangle_it 3.914 r_scbond_it 2.41 r_angle_refined_deg 1.434 r_mcangle_it 1.229 r_mcbond_it 0.945 r_nbtor_refined 0.304 r_nbd_refined 0.226 r_symmetry_vdw_refined 0.217 r_symmetry_hbond_refined 0.159 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 878 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement HKL-2000 data reduction