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Structural analysis of Leishmania major ubiquitin conjugating enzyme E2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 3 M Sodium chloride 0.1 M HEPES, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.04 69.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.448 α = 90 b = 114.448 β = 90 c = 139.547 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-12-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.97957, 0.95372, 0.97975 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 91.67 0.077 13.3 6.3 54915 54915 37.14
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.108 61.17 0.818 1.6 4 5243
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 50 54915 54915 2919 91.67 0.18613 0.18613 0.18486 0.1906 0.21039 0.2187 RANDOM 47.006
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -0.45 0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.495 r_dihedral_angle_4_deg 15.649 r_dihedral_angle_3_deg 14.488 r_dihedral_angle_1_deg 5.428 r_scangle_it 3.937 r_scbond_it 3.001 r_mcangle_it 1.931 r_mcbond_it 1.212 r_angle_refined_deg 1.153 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.495 r_dihedral_angle_4_deg 15.649 r_dihedral_angle_3_deg 14.488 r_dihedral_angle_1_deg 5.428 r_scangle_it 3.937 r_scbond_it 3.001 r_mcangle_it 1.931 r_mcbond_it 1.212 r_angle_refined_deg 1.153 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.187 r_symmetry_hbond_refined 0.187 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.088 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3882 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHELXS phasing