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Crystal structure of particulate methane monooxygenase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 298 PEG 8000, zinc acetate, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.4 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 264.14 α = 90 b = 264.14 β = 90 c = 150.005 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-08-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B 1.377, 1.280 APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 30 91.1 0.095 7.7 3.4 118268 118268 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.874 0.612
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.801 29.55 112261 5932 91.2 0.27303 0.27153 0.2734 0.30157 0.3033 RANDOM 69.985
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.34 1.34 -2.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.14 r_dihedral_angle_3_deg 23.693 r_dihedral_angle_4_deg 18.17 r_dihedral_angle_1_deg 10.165 r_angle_refined_deg 2.074 r_scangle_it 1.659 r_scbond_it 1.064 r_mcangle_it 0.652 r_symmetry_vdw_refined 0.585 r_mcbond_it 0.391
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.14 r_dihedral_angle_3_deg 23.693 r_dihedral_angle_4_deg 18.17 r_dihedral_angle_1_deg 10.165 r_angle_refined_deg 2.074 r_scangle_it 1.659 r_scbond_it 1.064 r_mcangle_it 0.652 r_symmetry_vdw_refined 0.585 r_mcbond_it 0.391 r_nbtor_refined 0.343 r_symmetry_hbond_refined 0.299 r_nbd_refined 0.285 r_metal_ion_refined 0.25 r_xyhbond_nbd_refined 0.196 r_chiral_restr 0.165 r_bond_refined_d 0.02 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19755 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling SOLVE phasing