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Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified microbatch 7.9 313 1.2M sodium dihydrogen phosphate, 1.2M potassium dihydrogen sulfate, 0.1M TRIS, pH 7.9, modified microbatch, temperature 313K
Crystal Properties Matthews coefficient Solvent content 4.05 69.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.016 α = 90 b = 97.016 β = 90 c = 127.59 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0600 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 89.2 0.065 28161
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 41.5 0.16
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAS THROUGHOUT 2.3 37.932 28102 1450 89.468 0.225 0.22461 0.2228 0.2375 0.2578 0.2693 Thin shells 44.002
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.283 0.642 1.283 -1.925
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.183 r_dihedral_angle_3_deg 13.645 r_dihedral_angle_4_deg 11.053 r_dihedral_angle_1_deg 6.755 r_mcangle_it 3.417 r_scangle_it 3.141 r_mcbond_it 2.216 r_scbond_it 1.914 r_mcangle_other 1.912 r_scangle_other 1.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.183 r_dihedral_angle_3_deg 13.645 r_dihedral_angle_4_deg 11.053 r_dihedral_angle_1_deg 6.755 r_mcangle_it 3.417 r_scangle_it 3.141 r_mcbond_it 2.216 r_scbond_it 1.914 r_mcangle_other 1.912 r_scangle_other 1.44 r_angle_refined_deg 1.153 r_angle_other_deg 0.683 r_scbond_other 0.559 r_mcbond_other 0.422 r_symmetry_vdw_refined 0.248 r_symmetry_vdw_other 0.204 r_nbd_refined 0.201 r_nbtor_refined 0.18 r_nbd_other 0.169 r_symmetry_hbond_refined 0.134 r_xyhbond_nbd_refined 0.102 r_nbtor_other 0.079 r_chiral_restr 0.068 r_xyhbond_nbd_other 0.053 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2696 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction